BSRC "Alexander Fleming" Publications

2025 - (9)

Michail Patsakis, Kimonas Provatas, Fotis A Baltoumas, Nikol Chantzi, Ioannis Mouratidis, Georgios A Pavlopoulos, Ilias Georgakopoulos-Soares. 2025, "MAFin: Motif Detection in Multiple Alignment Files", Bioinformatics., 2025 Mar 19: btaf125. doi: 10.1093/bioinformatics/btaf125. [PubMed].

Kanoura A, Giakountis A, Filippopoulou C, Karagiota A, Stamatakis G, Samiotaki M, Panayotou G, Simos G, Chachami G. 2025, "Interaction of TFAP2A with the Ku70/80 complex is crucial for HIF-dependent activation of hypoxia-inducible genes.", FEBS J. , 2025 Feb 24. doi: 10.1111/febs.70025. Online ahead of print. [PubMed].

Tomos I, Kanellopoulou P, Nastos D, Aidinis V. 2025, "Pharmacological targeting of ECM homeostasis, fibroblast activation, and invasion for the treatment of pulmonary fibrosis.", Expert Opin Ther Targets., 2025 Feb 22. [PubMed].

George I Gavriilidis, Vasileios Vasileiou, Stella Dimitsaki, Georgios Karakatsoulis, Antonis Giannakakis, Georgios A Pavlopoulos, Fotis Psomopoulos. 2025, "APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19", Bioinformatics. , 2025 Feb 8:btaf063. doi: 10.1093/bioinformatics/btaf063. Online ahead of print. [PubMed].

Karakosta C, Samiotaki M, Bisoukis A, Bougioukas KI, Panayotou G, Papaconstantinou D, Moschos MM. 2025, "Differential Signaling Pathways Identified in Aqueous Humor, Anterior Capsule, and Crystalline Lens of Age-Related, Diabetic, and Post-Vitrectomy Cataract.", Proteomes. , 2025 Feb 3; 13(1):7. doi: 10.3390/proteomes13010007. [PubMed].

Spanou S, Makatounakis T, Filippopoulou C, Dougalis G, Stamatakis G, Nikolaou C, Samiotaki M, Chachami G, Papamatheakis J, Kretsovali A. 2025, "Promyelocytic Leukemia Protein (PML) Regulates Stem Cell Pluripotency Through Novel Sumoylation Targets.", Int J Mol Sci., 2025 Jan 28; 26(3):1145. doi: 10.3390/ijms26031145. [PubMed].

Ioannis Mouratidis, Maxwell A Konnaris, Nikol Chantzi, Candace S Y Chan, Michail Patsakis, Kimonas Provatas, Austin Montgomery, Fotis A Baltoumas, Congzhou M Sha, Manvita Mareboina, Georgios A Pavlopoulos, Dionysios V Chartoumpekis, Ilias Georgakopoulos-Soares. 2024, "Identification of the shortest species-specific oligonucleotide sequences", Genome Res., 2025 Jan 31. doi: 10.1101/gr.280070.124. Online ahead of print. [PubMed].

Mathijs P Scholtes, Maryam Akbarzadeh, Alexandros Galaras, J Alberto Nakauma-Gonzáles, Ameneh Bazrafshan, Vandana Solanki, Bram Torenvliet, Leila Beikmohammadi, Valeria Lozovanu, Shahla Romal, Panagiotis Moulos, Nikoleta Vavouraki, Tsung Wai Kan, Mahesh Algoe, Martin E van Royen, Andrea Sacchetti, Thierry P P van den Bosch, Bert Eussen, Annelies de Klein, Geert J L H van Leenders, Joost L Boormans, Pantelis Hatzis, Robert-Jan Palstra, Tahlita C M Zuiverloon, Tokameh Mahmoudi. 2025, "Integrative analysis of patient-derived tumoroids and ex vivo organoid modeling of ARID1A loss in bladder cancer reveals therapeutic molecular targets", Cancer Lett., 2025 Jan 29:217506. doi: 10.1016/j.canlet.2025.217506. Online ahead of print. [PubMed].

Mouratidis I, Konnaris M, Chantzi N, Chan CSY, Patsakis M, Provatas K, Montgomery A, Baltoumas FA, Sha CM, Mareboina M, Pavlopoulos GA, Chartoumpekis DV, Georgakopoulos-Soares I. 2025, "Identification of the shortest species-specific oligonucleotide sequences.", Genome Res., 2025 Jan 2: gr.280070.124. doi: 10.1101/gr.280070.124. Epub ahead of print. [PubMed].