BSRC "Alexander Fleming" Publications

2024 - (36)

Liakos A, Ntakou-Zamplara KZ, Angelova N, Konstantopoulos D, Synacheri AC, Spyropoulou Z, Tsarmaklis IA, Korrou-Karava D, Nikolopoulos G, Lavigne MD, Fousteri M. 2024, "Cockayne syndrome B protein is implicated in transcription and associated chromatin dynamics in homeostatic and genotoxic conditions", Aging Cell, , [DOI], [PubMed].

Kafyra, M., Kalafati, I.P., Stefanou, G., Kourlaba, G., Moulos, P., Varlamis, I., Kaliora, A.C., Dedoussis, G.V. 2024, "A Dietary Intervention in Adults with Overweight or Obesity Leads to Weight Loss Irrespective of Macronutrient Composition.", Nutrients, 2024, 16(17):2842. [PubMed].

Dimitriou, M., Moulos P., Kalafati, I.P., Saranti, G., Rallidis, L.S., Dedoussis, G.V. 2024, "Evaluation of Polygenic Risk Scores for Prediction of Coronary Artery Disease in a Greek Case-Control Study.", J Pers Med, 2024, 14(6):565. [PubMed].

Michael Kosicki, Fotis A Baltoumas, Guy Kelman, Joshua Boverhof, Yeongshnn Ong, Laura E Cook, Diane E Dickel, Georgios A Pavlopoulos, Len A Pennacchio, Axel Visel. 2024, "VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers.", Nucleic Acids Res., 2024 Oct 29 :gkae940. doi: 10.1093/nar/gkae940. Online ahead of print. [PubMed].

Konstantakopoulou C, Verykokakis M. 2024, "Key functions of the transcription factor Bcl6 during T cell development", Adv Exp Med Biol., 2024; 1459:79-94. doi: 10.1007/978-3-031-62731-6_4 [PubMed].

Romani P, Benedetti G, Cusan M, Arboit M, Cirillo C, Wu X, Rouni G, Kostourou V, Aragona M, Giampietro C, Grumati P, Martello G, Dupont S. 2024, "Mitochondrial mechanotransduction through MIEF1 coordinates the nuclear response to forces.", Nat Cell Biol., 2024 Oct 21. doi: 10.1038/s41556-024-01527-3. Epub ahead of print. [PubMed].

Rigkos K, Filis G, Antonopoulou I, de Oliveira Maciel A, Saridis P, Zarafeta D, Skretas G. 2024, "Biomimetic CO2 Capture Unlocked through Enzyme Mining: Discovery of a Highly Thermo- and Alkali-Stable Carbonic Anhydrase.", Environmental Science & Technology., 2024 Oct 8; 58(40):17732-17742. [PubMed].

Iliopoulou L, Lianopoulou E, Kollias G. 2024, "IL-23 exerts dominant pathogenic functions in Crohn's disease-ileitis.", Mucosal Immunol., S1933-0219(24)00049-7. [PubMed].

Huynh NC, Ling R, Komagamine M, Shi T, Tsukasaki M, Matsuda K, Okamoto K, Asano T, Muro R, Pluemsakunthai W, Kollias G, Kaneko Y, Takeuchi T, Tanaka S, Komatsu N, Takayanagi H. 2024, "Oncostatin M-driven macrophage-fibroblast circuits as a drug target in autoimmune arthritis.", Inflamm Regen., 44(1) :36 [PubMed].

Roumelioti F, Tzaferis C, Konstantopoulos D, Papadopoulou D, Prados A, Sakkou M, Liakos A, Chouvardas P, Meletakos T, Pandis Y, Karagianni N, Denis MC, Fousteri M, Armaka M, Kollias G. 2024, "Mir221/222 drive synovial hyperplasia and arthritis by targeting cell cycle inhibitors and chromatin remodeling components.", Elife., 13:e84698. [PubMed].

Iliopoulou L, Koliaraki V, Bamias G, Kollias G. 2024, "Re-evaluating the Conclusions of the Study by Steiner et al: Insufficient Evidence to Support TNFΔARE Mice as a Model of Intestinal Fibrosis.", Am J Pathol., 194(6):1154-1155 [PubMed].

Christodoulou-Vafeiadou E, Geka C, Iliopoulou L, Ntari L, Denis MC, Karagianni N, Kollias G. 2024, "A Novel human IL-23A Overexpressing Mouse Model of Systemic Lupus Erythematosus.", Arthritis Rheumatol., doi: 10.1002/art.42830. Online ahead of print. [PubMed].

Papadopoulou D, Mavrikaki V, Charalampous F, Tzaferis C, Samiotaki M, Papavasileiou KD, Afantitis A, Karagianni N, Denis MC, Sanchez J, Lane JR, Faidon Brotzakis Z, Skretas G, Georgiadis D, Matralis AN, Kollias G. 2024, "Discovery of the First-in-Class Inhibitors of Hypoxia Up-Regulated Protein 1 (HYOU1) Suppressing Pathogenic Fibroblast Activation.", Angew Chem Int Ed Engl., e202319157. doi: 10.1002/anie.202319157. Online ahead of print. [PubMed].

Bagratuni T, Aktypi F, Theologi O, Sakkou M, Verrou KM, Mavrianou-Koutsoukou N, Patseas D, Liacos C, Skourti S, Papadimou A, Taouxi K, Theodorakakou F, Kollias G, Sfikakis P, Terpos E, Dimopoulos MA, Kastritis E. 2024, "Single-cell analysis of MYD88L265P and MYD88WT Waldenström macroglobulinemia patients.", Hemasphere., 8(2):e27. [PubMed].

Rinotas V, Iliaki K, Pavlidi L, Meletakos T, Mosialos G, Armaka M. 2024, "Cyld restrains the hyperactivation of synovial fibroblasts in inflammatory arthritis by regulating the TAK1/IKK2 signaling axis.", Cell Death Dis., 2024 Aug 9; 15(8):584. doi: 10.1038/s41419-024-06966-2. [PubMed].

Maria Tektonidou, Kleio-Maria Verrou, Harikleia Gakiopoulou, Menelaos Manoloukos, Panagiotis Lembessis, Pantelis Hatzis, Petros P Sfikakis. 2024, "Kidney whole-transcriptome profiling in primary antiphospholipid syndrome reveals complement, interferons and NETs-related gene expression.", Rheumatology (Oxford), 2024 Aug 6: keae397. doi: 10.1093/rheumatology/keae397. [PubMed].

Krithara A, Nentidis A, Vandorou E, Katsimpras G, Almirantis Y, Arnal M, Bunevicius A, Farre-Maduell E, Kassiss M, Konstantakos V, Matis-Mitchell S, Polychronopoulos D, Rodriguez-Pascual J, Samaras EG, Samiotaki M, Sanoudou D, Vozi A, Paliouras G. 2024, "BioASQ Synergy: A Dialogue between QA systems and biomedical experts for promoting COVID-19 research", J Am Med Inform Assoc., 2024 Aug 24: ocae232. doi: 10.1093/jamia/ocae232. Online ahead of print. [PubMed].

Stefanakis K, Samiotaki M, Papaevangelou V, Valenzuela-Vallejo L, Giannoukakis N, Mantzoros CS. 2024, "Longitudinal proteomics of leptin treatment in humans with acute and chronic energy deficiency-induced hypoleptinemia reveal novel, mainly immune-related, pleiotropic effects.", Metabolism., 2024 Oct; 159:155984. doi: 10.1016/j.metabol.2024.155984. Epub 2024 Aug 2. [PubMed].

Angelopoulou E, Kitani R.-A, Stroggilos R, Lygirou V, Vasilakis I.-A, Letsou K, Vlahou A, Zoidakis J, Samiotaki M, Kanaka-Gantenbein, C. et al. 2024, "Tear Proteomics in Children and Adolescents with Type 1 Diabetes: A Promising Approach to Biomarker Identification of Diabetes Pathogenesis and Complications", Int. J. Mol. Sci. 2024, 25, 9994. [doi].

Theodoros Rampias, Thomas Antoniou, Annelies Stevaert, Lara Kravariti, Benjamin Van Loy, Julie Vandeput, Jacopo Sgrignani, Natalia Filippidou, Patrizia Locatelli, Samiotaki M, Eleftherios Paraskevas Tzakos, Andrea Cavalli, Lieve Naesens, Diamantis C. Sideris, Andreas G. Tzakos. 2024, "Exploration of isatin-based inhibitors of SARS-CoV-2 Nsp15 endoribonuclease", European Journal of Medicinal Chemistry, 2024, 116886, ISSN 0223-5234, [doi].

Theodosios Theodosiou, Konstantinos Vrettos, Ismini Baltsavia, Fotis Baltoumas, Nikolas Papanikolaou, Andreas Ν Antonakis, Dimitrios Mossialos, Christos A Ouzounis, Vasilis J Promponas, Makrina Karaglani, Ekaterini Chatzaki, Sven Brandau, Georgios A Pavlopoulos, Evangelos Andreakos, Ioannis Iliopoulos. 2024, "BioTextQuest v2.0: An evolved tool for biomedical literature mining and concept discovery", Comput Struct Biotechnol J, 2024 Aug 21: 23:3247-3253. doi: 10.1016/j.csbj.2024.08.016. eCollection 2024 Dec. [PubMed].

Athanasios Armakolas, Nektarios Alevizopoulos, Martha Stathaki, Constantina Petraki, George Agrogiannis, Martina Samiotaki, George Panayotou, Eirini Chatzinikita, Michael Koutsilieris. 2024, "Anti-PEc: Development of a novel monoclonal antibody against prostate cancer", Br J Cancer., 2024 Jun 20. doi: 10.1038/s41416-024-02713-8. Online ahead of print. [PubMed].

Camille Moeckel, Manvita Mareboina, Maxwell A Konnaris, Candace S Y Chan, Ioannis Mouratidis, Austin Montgomery, Nikol Chantzi, Georgios A Pavlopoulos, Ilias Georgakopoulos-Soares. 2024, "A survey of k-mer methods and applications in bioinformatics", Comput Struct Biotechnol J., 2024 May 21: 23:2289-2303. doi: 10.1016/j.csbj.2024.05.025. eCollection 2024 Dec. [PubMed].

Eleni Papakonstantinou, Konstantina Dragoumani, Antonia Mataragka, Flora Bacopoulou, Christos Yapijakis, Nikolaos Aa Balatsos, Katerina Pissaridi, Dimitris Ladikos, Aspasia Eftymiadou, George Katsaros, Evangelos Gikas, Pantelis Hatzis, Martina Samiotaki, Michalis Aivaliotis, Vasileios Megalooikonomou, Antonis Giannakakis, Costas Iliopoulos, Erik Bongcam-Rudloff, Sofia Kossida, Elias Eliopoulos, George P Chrousos, Dimitrios Vlachakis. 2024, "Fingerprinting Breast Milk; insights into Milk Exosomics.", EMBnet J., 2024:29 :e1048. doi: 10.14806/ej.29.0.1048. Epub 2024 May 22. [PubMed].

Tsekrekou M, Giannakou M, Papanikolopoulou K, Skretas G. 2024, "Protein aggregation and therapeutic strategies in SOD1- and TDP-43- linked ALS.", Frontiers in Molecular Biosciences., 2024 May 24; 11:1383453. [PubMed].

Eleni Aplakidou, Nikolaos Vergoulidis, Maria Chasapi, Nefeli K Venetsianou, Maria Kokoli, Eleni Panagiotopoulou, Ioannis Iliopoulos, Evangelos Karatzas, Evangelos Pafilis, Ilias Georgakopoulos-Soares, Nikos C Kyrpides, Georgios A Pavlopoulos, Fotis A Baltoumas. 2024, "Visualizing metagenomic and metatranscriptomic data: A comprehensive review", Comput Struct Biotechnol J., 2024 May 3: 23:2011-2033. doi: 10.1016/j.csbj.2024.04.060. eCollection 2024 Dec. [PubMed].

Stylianaki EA, Mouchlis VD, Magkrioti C, Papavasileiou KD, Afantitis A, Matralis AN, Aidinis V. 2024, "Identification of two novel chemical classes of Autotaxin (ATX) inhibitors using Enalos Asclepios KNIME nodes.", Bioorg Med Chem Lett., 2024 May 1; 103:129690 [PubMed].

Zerva MC, Triantafylloudis C, Paspaliaris V, Skoulakis EMC, Papanikolopoulou K. 2024, "Choline Metabolites Reverse Differentially the Habituation Deficit and Elevated Memory of Tau Null Drosophila.", Cells., 2024 Apr 25; 13(9):746. doi: 10.3390/cells13090746. [PubMed].

Ioannis Mouratidis, Fotis A Baltoumas, Nikol Chantzi, Michail Patsakis, Candace S Y Chan, Austin Montgomery, Maxwell A Konnaris, Eleni Aplakidou, George C Georgakopoulos, Anshuman Das, Dionysios V Chartoumpekis, Jasna Kovac, Georgios A Pavlopoulos, Ilias Georgakopoulos-Soares. 2024, "kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species", Comput Struct Biotechnol J. , 2024 Apr 21:23: 1919-1928. doi: 10.1016/j.csbj.2024.04.050. eCollection 2024 Dec. [PubMed].

Atsoniou K, Giannopoulou E, Georganta EM, Skoulakis EMC. 2024, "Drosophila Contributions towards Understanding Neurofibromatosis 1.", Cells., 2024 Apr 21; 13(8):721. doi: 10.3390/cells13080721. [PubMed].

Vasilopoulou E, Chroumpi T, Skretas G. 2024, "Escherichia coli strains with precise domain deletions in the ribonuclease RNase E can achieve greatly enhanced levels of membrane protein production.", Protein Science., 2024 Feb; 33(2):e4864. [PubMed].

Christina Arseni, Martina Samiotaki, George Panayotou, George Simos, Ilias Mylonis. 2024, "Combinatorial regulation by ERK1/2 and CK1δ protein kinases leads to HIF-1α association with microtubules and facilitates its symmetrical distribution during mitosis", Cell Mol Life Sci., 2024 Feb 1; 81(1):72. doi: 10.1007/s00018-024-05120-7. [PubMed].

Martina Samiotaki, George Panayotou, Panagiotis Chandris. 2024, "Detection of Protein Tyrosine Phosphatase Interacting Partners by Mass Spectrometry", Methods Mol Biol. , 2024:2743 :165-180. doi: 10.1007/978-1-0716-3569-8_11. [PubMed].

Arseni C, Samiotaki M, Panayotou G, Simos G, Mylonis I. 2024, "Combinatorial regulation by ERK1/2 and CK1δ protein kinases leads to HIF-1α association with microtubules and facilitates its symmetrical distribution during mitosis.", Cell Mol Life Sci., 2024 Feb 1; 81(1):72. doi: 10.1007/s00018-024-05120-7. [PubMed].

Tsopela V, Korakidis E, Lagou D, Kalliampakou KI, Milona RS, Kyriakopoulou E, Mpekoulis G, Gemenetzi I, Stylianaki EA, Sideris CD, Sioli A, Kefallinos D, Sideris DC, Aidinis V, Eliopoulos AG, Kambas K, Vassilacopoulou D, Vassilaki N. 2024, "L-Dopa decarboxylase modulates autophagy in hepatocytes and is implicated in dengue virus-caused inhibition of autophagy completion. ", Biochim Biophys Acta Mol Cell Res., 2024 Jan; 1871(1):119602. [PubMed].

Kaffe E, Tisi A, Magkrioti C, Aidinis V, Mehal WZ, Flavell RA, Maccarrone M. 2023, "Bioactive signaling lipids as drivers of chronic liver diseases. Bioactive signaling lipids as drivers of chronic liver diseases.", J Hepatol., 2024 Jan: ;80(1):140-154. [PubMed].