metaseqR
The original version of the PANDORA algorithm, initially offering an interface to:
- 6 statistical tests for RNA-Seq data (DESeq, edgeR, voom, NBPSeq, baySeq, NOISeq)
- 8 normalization methods (DESeq, DESeq2, EDASeq, edgeR, NBPSeq, NOISeq, ABSSeq, DSS)6
- 6 p-value combination methods (PANDORA, Simes, Fisher, Union, Intersection, Whitlock)
- A complete end-to-end pipeline for the analysis of RNA-Seq data, starting from BAM files up to reporting of the results
- A wealth of exported data summary values and metrics at various scales
metaseqR offers a complete HTML report of the results with numerous quality control and result exploration interactive graphs and tables. metaseqR is suitable for older systems while offering the accuracy of the PANDORA algorithm.
Availability:
GitHub